Announcements

3/15/2008

Module 4 papers have been added. The ICE paper is preprint so please request a copy if you haven't received one via email.

Project proposal submits has now been fixed. Please send it again but if i have it in email it should be ok too.
I have copies of Eric Schadt's paper so email me if you want a copy. Again, this is a preprint only so we can't post it on the website.
Two more papers have now been posted for Module 3.

Apologies about the website being down. Here's a list of those I have paper summaries from either online submission or email. Because of what happened the webserver, we will accept late submissions for Module 1 paper summaries until the due date of Module 2 paper summaries.
- Ken Arthur
- Linda Bee
- Richard Wang
- Areum Han
- Brodsky
- Grujic
- Nils Homer
- Emrah Kostem
- Narendra Gayam
New submissions for Module 2 paper summaries and project proposals are available.
Two new papers have been posted for Module 2.

Module 2 papers have been posted. Summaries must be submitted for 3 of the papers on Feb. 9th by electronic submission.

Presentation from one of the papers has now been posted. You can find future presentations under Lectures or Papers.
The R Tutorial presentation and R code has now been posted as well under Lectures

Monday's class will start 15 minutes later than the scheduled time.
Submission program is now working. Check the note below about summary submissions.
The list of papers has also been updated
A major change in how we do paper summaries. Based on feedback that paper summaries due at each class is too much compared to standard graduate summaries, the new format will be as follows. You will need to turn in one paper summary per unit. The summary should cover any 3 of the papers in the unit and is due the class after the end of the unit. For the first unit, you can either turn in a summary in the new format, or the old format or some reasonable combination (so if you did 2 summaries already, you can turn in your third at the end of the unit.)
In todays class, Jimmie will start todays lecture by describing how to use R to compute the statistics we presented in class on wednesday. Then I will go over multiple hypothesis testing and Raymond will give his presentation on the Brem and Kruglyack paper.
This Wednesday, while the class is officially cancelled, Jimmie will present how to load in and process expression data and SNP data in R. By the end of the session, you all should be able to replicate the types of analyses in the papers in this unit yourselves.

Welcome to CS229.
Please create an account and use it like a wiki by contributing content such as questions, general discussion, references, project ideas and praise for the TA.
ALL ASSIGNMENTS MUST BE SUBMITTED ELECTRONICALLY under Submit
- Please use the following naming convention for your files (LASTNAME_ASSIGNMENT_COURSE.[EXTENSION])
- The first reading summaries can now be submitted
Link to CS124 is diego.cs.ucla.edu/cs124
Syllabus has been posted under Syllabus
Lectures 1 & 2 have been posted under Lectures